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Hyo-Joong Kim's Publications

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Hachimoji DNA and RNA: A genetic system with eight building blocks
Hoshika H, Leal N, Kim MJ, Kim MS, Karalkar NB, Kim HJ, Bates AM, Watkins Jr. NE, SantaLucia HA, Meyer AJ, DasGupta S, Piccirilli JA, Ellington AD, SantaLucia Jr. J, Georgiadis MM, Benner SA
Science (2019) 22 Feb 2019: Vol. 363, Issue 6429, pp. 884-887. DOI: 10.1126/science.aat0971
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A Direct Prebiotic Synthesis of Nicotinamide Nucleotide
Hyo-Joong Kim, Steven A. Benner
Chemistry , Wiley-VCH (2018) Jan 12;24(3):581-584. doi: 10.1002/chem.201705394
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Mineral-Organic Interactions in Prebiotic Synthesis
Steven A. Benner, Hyo-Joong Kim, and Elisa Biondi
Nucl. Acids & Mol. Bio. 35 , Springer 31-83 (2018) https://doi.org/10.1007/978-3-319-93584-3_3
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"Skinny" and "Fat" DNA: Two New Double Helices
Hoshika S, Singh I, Switzer C, Molt RW Jr, Leal NA, Kim MJ, Kim MS, Kim HJ, Georgiadis MM, Benner SA
J. Am. Chem. Soc. (2018) Sep 19;140(37):11655-11660. doi: 10.1021/jacs.8b05042. Epub 2018 Sep 10
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Prebiotic stereoselective synthesis of purine and noncanonical pyrimidine nucleotide from nucleobases and phosphorylated carbohydrates
Hyo-Joong Kim, Steven A. Benner
Proc. Natl. Acad. Sci. USA (2017) October, 114 (43) 11315-11320. https://doi.org/10.1073/pnas.1710778114
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Assays To Detect the Formation of Triphosphates of Unnatural Nucleotides: Application to Escherichia coli Nucleoside Diphosphate Kinase
Mariko F. Matsuura, Ryan W. Shaw, Jennifer D. Moses, Hyo-Joong Kim, Myong-Jung Kim, Myong-Sang Kim, Shuichi Hoshika, Nilesh Karalkar, and Steven A. Benner
ACS Synthetic Biology , American Chemical Society (2016) 5 (3), pp 234-240 DOI: 10.1021/acssynbio.5b00172
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Crystal structures of deprotonated nucleobases from an expanded DNA alphabet
Mariko F. Matsuura, Hyo-Joong Kim, Daisuke Takahashi, Khalil A. Abboud and Steven A. Benner
Structural Chemistry , Acta Crystallographica (2016) C72, 952-959. doi: 10.1107/S2053229616017071
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Evolution of functional six-nucleotide DNA
Zhang, L., Yang, Z., Sefah, K., Bradley, K. M., Hoshika, S., Kim, M-J,. Kim, H-J., Zhu., Jimenez, E., Cansiz, S., Teng, I-T., Champanhac, C, McLendon, C., Liu, C., Zhang, W., Gerloff, D. L., Huang, Z., Tan, W., Benner, S. A.
J. Am. Chem. Soc. (2015) DOI: 10.1021/jacs.5b02251
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Transcription, Reverse Transcription, and Analysis of RNA Containing Artificial Genetic Components
Nicole A. Leal, Hyo-Joong Kim, Shuichi Hoshika, Myong-Jung Kim, Matthew A. Carrigan, and Steven A. Benner
ACS Synthetic Biology , American Chemical Society (2015) Apr 17;4(4):407-13. doi: 10.1021/sb500268n
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A Crystal Structure of a Functional RNA Molecule Containing an Artificial Nucleobase Pair
Armando R. Hernandez, Yaming Shao, Shuichi Hoshika, Zunyi Yang, Sandip A. Shelke, Julien Herrou, Hyo-Joong Kim, Myong-Jung Kim, Joseph A. Piccirilli, and Steven A. Benner
Angew. Chem. Int. Ed. 54 9853-9856 (2015) doi: 10.1002/anie.201504731
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Ribonucleosides for an Artificially Expanded Genetic Information System
Hyo-Joong Kim, Nicole A. Leal, Shuichi Hoshika, Steven A. Benner
J. Org. Chem. (2014) 79 (7), pp 3194-3199
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The "strong" RNA world hypothesis. Fifty years old.
Neveu, Mark; Kim, Hyo-Joong; Benner, Steven A
Astrobiology 13 (4) (2013) DOI: 10.1089/ast.2012.0868
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Synthesis and Properties of 5-Cyano-Substituted Nucleoside Analog with a Donor-Donor-Acceptor Hydrogen-Bonding Pattern
Hyo-Joong Kim, Fei Chen, and Steven A. Benner
J. Org. Chem. (2012)
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Setting the Stage: The History, Chemistry, and Geobiology behind RNA
Benner, SA; Kim, HJ; Yang, ZY
RNA Worlds: From Life's Origins to Diversity in Gene Regulation , ed. John F. Atkins, Raymond F. Gesteland, Thomas R. Cech , Cold Spring Harbor Laboratory Press 7-19 (2011)

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2'-Deoxy-1-methylpseudocytidine, a stable analog of 2'-deoxy-5-methylisocytidine
Kim, HJ; Leal, NA; Benner, SA
Bioorg. Med. Chem. 17 (10) 3728-3732 (2009)
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Synthesis of pyrophosphates for in vitro selection of catalytic RNA molecules
Kim, HJ; Kim, MJ; Karalkar, N; Hutter, D; Benner, SA
Nuc. Nuc. Nuc. acids 27 , Taylor & Francis Group 43-56 (2008)

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Synthesis and antiviral activity of 7-deazaneplanocin A against orthopoxviruses (vaccinia and cowpox virus)
Arumugham, B; Kim, HJ; Prichard, MN; Kern, ER; Chu, CK
Bioorg. Med. Chem. Lett. 16 (2) 285-287 (2006)
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Reaction of tetramethylimidazol-2-ylidene with (Tp(tBu,Me))YbE(thf) (E=I, CH2SMe3): simple adduct and a hydrocarbyl tethered carbene ligand
Ferrence, GM; Arduengo, AJ; Jockisch, A; Kim, HJ; McDonald, R; Takats, J
J. Alloys Compd. 418 184-188 (2006)
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A stable dirhodium tetracarboxylate carbenoid: Crystal structure, bonding analysis, and catalysis
Snyder, JP; Padwa, A; Stengel, T; Arduengo, AJ; Jockisch, A; Kim, HJ
J. Am. Chem. Soc. 123 (45) 11318-11319 (2001)

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Orthocyclophanes .3. Ketonands, Novel ketonic crowns of polyoxo[1(N)]orthocyclophane constitution
Lee, WY; Park, CH; Kim, HJ; Kim, SS
J. Org. Chem. 59 (4) 878-884 (1994)
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Biscyclophanes .2. Regioselectivity in the acid-catalyzed cycloalkylation of benzylbenzylic alcohol (BBA)
Lee, WY; Sim, WB; Kim, HJ; Yoon, SH
J. Chem. Soc., Perkin Trans. 1 (6) 719-729 (1993)
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